Protein Info for Psest_1932 in Pseudomonas stutzeri RCH2

Annotation: nitrite extrusion protein (nitrite facilitator)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 105 to 126 (22 residues), see Phobius details amino acids 138 to 163 (26 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 212 to 235 (24 residues), see Phobius details amino acids 247 to 265 (19 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 366 to 383 (18 residues), see Phobius details TIGR00886: nitrite transporter" amino acids 13 to 347 (335 residues), 314.8 bits, see alignment E=3.9e-98 PF07690: MFS_1" amino acids 23 to 349 (327 residues), 137.6 bits, see alignment E=2.5e-44

Best Hits

KEGG orthology group: K02575, MFS transporter, NNP family, nitrate/nitrite transporter (inferred from 99% identity to psa:PST_2406)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKI6 at UniProt or InterPro

Protein Sequence (403 amino acids)

>Psest_1932 nitrite extrusion protein (nitrite facilitator) (Pseudomonas stutzeri RCH2)
MSTSFWKAGHAPTLFASFLYFDLSFMVWYVLGPLGVQIAADLGLTTQQRAFMVATPILAG
AVLRLALGILADRTSPKTAGLFGQSVVIVALFVAWLHGIHSYEQALLLGLFLGMAGASFA
VALPLASQWYPAEHQGKAMGIAGAGNSGTVLAALFAPVLAAIFGWNNVFGLALIPLVLTL
IIFASVAKNAPNRPAPKSLADYMKALGDRDSWWFMFFYSVTFGGFLGLASTLPGYFHDQY
AFDPVKAGYYTAACVFAGSLLRPLGGALADRIGGIRALLVMYTVAAFCIAAVGFNLPSST
AALALFVVAMLSLGAGNGAVFQLVPQRFNKEIGVMTGLVGMAGGIGGFLLTAGLGAVKQS
TGDYQIGLWLFASLGVLAWFGLHGVKRRWRTTWGSAAVTAARV