Protein Info for PGA1_c01930 in Phaeobacter inhibens DSM 17395

Annotation: replication-associated recombination protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 PF05496: RuvB_N" amino acids 28 to 150 (123 residues), 57.9 bits, see alignment E=3.2e-19 PF00004: AAA" amino acids 61 to 168 (108 residues), 59.5 bits, see alignment E=1.5e-19 PF07728: AAA_5" amino acids 61 to 151 (91 residues), 25.8 bits, see alignment E=2.9e-09 PF16193: AAA_assoc_2" amino acids 192 to 265 (74 residues), 74.2 bits, see alignment E=2.4e-24 PF12002: MgsA_C" amino acids 266 to 430 (165 residues), 214.2 bits, see alignment E=3.3e-67

Best Hits

KEGG orthology group: K07478, putative ATPase (inferred from 88% identity to sit:TM1040_0288)

Predicted SEED Role

"FIG065221: Holliday junction DNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DLC4 at UniProt or InterPro

Protein Sequence (440 amino acids)

>PGA1_c01930 replication-associated recombination protein A (Phaeobacter inhibens DSM 17395)
MADLFDSGDAAPRPDPQSEVNRPLADRLRPQSLAEVIGQAQVLGEDAPLGVMLASGSLSS
LIFWGPPGVGKTTIARLLARETDLHFVQISAIFTGVPDLKKVFEAAKIRRQNGQGTLLFV
DEIHRFNKAQQDGFLPHMEDGTILLVGATTENPSFELNAAVLSRAQVLVLERLSLADLER
LTQRAEQELDRALPLTADARDALQEMADGDGRALLNLIEQVAAWKVDSPLGREALATRLM
RRAAKYDKSGDEHYNLISALHKSVRGSDPDAALYWFARMLEGGEDPRYLARRLARMAVED
IALADPQAQGICIQAWETYERLGSPEGELALAQAVIYLALAPKTNAGYMAYKAARRLAKQ
TGSAPPPKHILNAPTKLMKSQGYGDGYDYDHNAADGFSGQDYFPDDVPRPVLYQPVERGF
ERELKRRTEYFANLRAKRNS