Protein Info for PGA1_c19040 in Phaeobacter inhibens DSM 17395

Annotation: multidrug resistance protein MdtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1268 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 332 to 354 (23 residues), see Phobius details amino acids 360 to 383 (24 residues), see Phobius details amino acids 389 to 411 (23 residues), see Phobius details amino acids 432 to 453 (22 residues), see Phobius details amino acids 464 to 487 (24 residues), see Phobius details amino acids 510 to 529 (20 residues), see Phobius details amino acids 545 to 569 (25 residues), see Phobius details amino acids 593 to 619 (27 residues), see Phobius details amino acids 1023 to 1042 (20 residues), see Phobius details amino acids 1050 to 1070 (21 residues), see Phobius details amino acids 1076 to 1099 (24 residues), see Phobius details amino acids 1125 to 1145 (21 residues), see Phobius details amino acids 1165 to 1184 (20 residues), see Phobius details amino acids 1188 to 1206 (19 residues), see Phobius details PF00873: ACR_tran" amino acids 14 to 489 (476 residues), 308 bits, see alignment E=6.5e-96 amino acids 608 to 918 (311 residues), 62.1 bits, see alignment E=1.2e-21 amino acids 995 to 1188 (194 residues), 114.7 bits, see alignment E=1.5e-37

Best Hits

KEGG orthology group: None (inferred from 79% identity to sit:TM1040_0987)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EMV1 at UniProt or InterPro

Protein Sequence (1268 amino acids)

>PGA1_c19040 multidrug resistance protein MdtC (Phaeobacter inhibens DSM 17395)
MTGIVSWAAERARMILAFIAISLLVGGFAYASLPKEGEPDIEIPALFISVPFPGISAEDA
ETLLVKVMETELADLDGLDKMSSTAAEGYGGVALEFDFGWDKTAIMADVRDAMDAAEADF
PEGAEKYTINEINFSEFPIVIVNLTGAVPERTMARIAKDLQDDLEALEPVLEAGIAGNRD
EMVEVLIDPLRLEAYNVTALELITVVQNNNQLIAAGEVESNQGTFSVKIPSSFDEVRDIY
ELPIKTNGDRVVTLGELATINFTFEDRRGTARFNGEDTVALQVVKRKGYNLIDTVDLVKE
TLAEAKTKWPPELTAAVSVGTSNDQSRVVASMVGQLEGSVLTAVALVMIVVLSALGSRAA
LLVGFAIPTSFLLCFALLAVMGISISNIVMFGLILAVGMLVDGAIVVVEYADKRIKEGSG
PMHAYVEAAQRMFWPVVSSTATTLCAFLPMLFWPGVPGEFMGMLPVTLIFVLSASLVVAL
IYLPVMGGVTGRMSRLFENLSDGLRAVAPWWLRAALVPVMLWGMFAGAMQMLNGSYLLPA
DVSDVAALIFGALIFVLASFGASVTLGAASLHRRETSVGAGYKHTPFGHFIKFIVGNPVM
PLVAIGAVAFSIMTVFTLFSTNNYGVEFFVESEPEQATAYVRARGNTSLMEEDEMVRQTE
QVILSHPAVVNVFSFAGEGGLNTDASGAQTPPDTVGQVQFEIIPWEDRPTQTETWFNGWF
TREVTATDFDGDTVIEEINTELAKLPGFEAEIRALAQGPASGKPIHLRLKGDRWDTLTAA
TQSARARFDDTPGLDLIEDSLPLPGIDWQIDVDVEKAGRYGADVASVGAMVQLVTRGILL
DTMRVDSSDEEIEIRVRLPEEDRVLSTLDVMKLRTEDGLVPLSNFISRQPVPKLEQINRV
QQQRYYDVKADIEPGLSKVITTGGNSGEEETLAYVKSFAEGSDTSASDLTGPSGAPLKLR
SLASADNLEAVQSALDDDARVVALNANERIAALTKWLETDPLPKDITWEWTGDQEEQAES
GAFLMKAFAGALALMFVILLAQFNSFYNSVLVLLAVVLSTTGVLIGMMVMQQPFSIIMTG
TGIVALAGIVVNNNIVLIDTYQEYAQKMPRIEAIIRTAEARIRPVLLTTITTMAGLAPMM
FGLSLDFINGGYSIDSPTSLWWKQLATAVVFGLGIATILTLLVTPSLLAIRVWLWIYVGA
LGRLLARITRGRSSRIARDMRLATKARTLPTTEILWEAEPDPDTPPVKTTERDGDRETLP
STPLRAAE