Protein Info for PGA1_c19010 in Phaeobacter inhibens DSM 17395

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details PF09976: TPR_21" amino acids 30 to 132 (103 residues), 25.6 bits, see alignment E=4.8e-10

Best Hits

KEGG orthology group: None (inferred from 62% identity to sil:SPO2330)

Predicted SEED Role

"Mlr7403 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DR99 at UniProt or InterPro

Protein Sequence (223 amino acids)

>PGA1_c19010 Uncharacterized protein conserved in bacteria (Phaeobacter inhibens DSM 17395)
MSDTDSFIDEVTEEVRRDRLFKMLKRYGWIGGIAVVLIVGGAALREYNRAQTEAASQALG
DQMIAALDSDDSAARATALDAITAETAGGDTVLKLLQAGALADAGDRAAAVERLNAVARN
GEMPLIYRHIATFKALGLQQESLPAADRRIQFEALAQPGAPLALLAQEQLALIDIEEDNT
DAAISRLQEIIASAGVTSDLKDRASQVIVALGGALEPVSATEG