Protein Info for HP15_1809 in Marinobacter adhaerens HP15

Annotation: peptide ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 signal peptide" amino acids 1 to 45 (45 residues), see Phobius details transmembrane" amino acids 145 to 170 (26 residues), see Phobius details amino acids 182 to 200 (19 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details amino acids 259 to 281 (23 residues), see Phobius details amino acids 310 to 333 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 160 to 341 (182 residues), 109.1 bits, see alignment E=1.1e-35

Best Hits

Swiss-Prot: 65% identical to YEJE_ECOLI: Inner membrane ABC transporter permease protein YejE (yejE) from Escherichia coli (strain K12)

KEGG orthology group: K13895, microcin C transport system permease protein (inferred from 90% identity to maq:Maqu_1540)

MetaCyc: 65% identical to putative oligopeptide ABC transporter membrane subunit YejE (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PNS9 at UniProt or InterPro

Protein Sequence (342 amino acids)

>HP15_1809 peptide ABC transporter, permease protein (Marinobacter adhaerens HP15)
MSFRSLTPIQQRRLRNFRKNRRGFWSLWIFLALFGLSLVAELIANDSPLVVSYKGDLYFP
VVQSVPEETFGGFLPTEADYRDPFIADEISANGWMVWPPIRFSYNTINYDLEVPSPAPPS
AENWLGTDDQGRDVAARVIYGFRISVLFGLTLTIASCIVGVVVGAIQGFYGGKIDLLGQR
FIEVWSGLPVLYLLIILSSIVQPNFWWLLGIMLLFSWMGLVDVVRAEFLRARNFEYVKAA
RALGLDNSKIMFRHILPNAMVATLTFLPFILTGAITGLTSLDFLGFGLPSGSPSLGELIA
QGKANLHAPWLGISAFVSLSLMLTLLVFVGEAVRDAFDPRKS