Protein Info for Psest_1872 in Pseudomonas stutzeri RCH2

Annotation: selT/selW/selH selenoprotein domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 93 PF10262: Rdx" amino acids 8 to 80 (73 residues), 113.3 bits, see alignment E=2.5e-37 TIGR02174: selT/selW/selH selenoprotein domain" amino acids 8 to 80 (73 residues), 76.3 bits, see alignment E=8.5e-26

Best Hits

KEGG orthology group: K07401, selenoprotein W-related protein (inferred from 96% identity to psa:PST_2464)

Predicted SEED Role

"SelT/selW/selH selenoprotein domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GI37 at UniProt or InterPro

Protein Sequence (93 amino acids)

>Psest_1872 selT/selW/selH selenoprotein domain (Pseudomonas stutzeri RCH2)
MSSSKPEIVITYCTQCQWLLRAAWLAQELLSTFADDLGRVSLVPATGGTFHISCDGEQIW
ERKHDGGFPEAKELKQRVRDRIDPQRSLGHNDR