Protein Info for PGA1_c18520 in Phaeobacter inhibens DSM 17395

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 86 PF10073: GapR_DNA-bd" amino acids 14 to 84 (71 residues), 113.1 bits, see alignment E=1.8e-37

Best Hits

Swiss-Prot: 54% identical to Y3797_RHIE6: UPF0335 protein RHECIAT_CH0003797 (RHECIAT_CH0003797) from Rhizobium etli (strain CIAT 652)

KEGG orthology group: None (inferred from 82% identity to sit:TM1040_1502)

Predicted SEED Role

"FIG01072817: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E1D1 at UniProt or InterPro

Protein Sequence (86 amino acids)

>PGA1_c18520 Uncharacterized protein conserved in bacteria (Phaeobacter inhibens DSM 17395)
MTEDQQSDSYRVTAGELRQFIERFERLDAEKKELADQQKEVMAEAKARGYDTKVMRKVIA
LRKRDKDDIAEEEAVLEMYKEALGMG