Protein Info for Psest_1856 in Pseudomonas stutzeri RCH2

Annotation: Permeases of the drug/metabolite transporter (DMT) superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 transmembrane" amino acids 23 to 45 (23 residues), see Phobius details amino acids 51 to 69 (19 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 107 to 128 (22 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 197 to 219 (23 residues), see Phobius details amino acids 231 to 251 (21 residues), see Phobius details amino acids 262 to 281 (20 residues), see Phobius details amino acids 287 to 304 (18 residues), see Phobius details PF00892: EamA" amino acids 24 to 151 (128 residues), 64.8 bits, see alignment E=5.3e-22 amino acids 164 to 304 (141 residues), 52.6 bits, see alignment E=3.1e-18

Best Hits

KEGG orthology group: None (inferred from 85% identity to psa:PST_2474)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKT4 at UniProt or InterPro

Protein Sequence (319 amino acids)

>Psest_1856 Permeases of the drug/metabolite transporter (DMT) superfamily (Pseudomonas stutzeri RCH2)
MGDNTCSSLVLEARFMRPLDMFRLLALAAIWGASFLFMRVIAPVLGTFPTAFFRVLLATA
GLLAILVVLRRRWDFRGKLGLCLVLGVINSGVPFALYAVAAQLVPAGYSAIFNATTPMMG
VLIGALFFAEELTLAKVLGVFSGLGGVALLMRIGPVPLEMGLLLGALACLGATACYGLGG
FLTRRWINRDGGLDSELVAFGSQAGAALCLLPLFGLSLLDAPPPSWGDTSVWLSLLGLGL
VCTAFAYILYFRLLADIGPVKTLTVTFLIPPFGVLWGVLFLDEPLSWAYVQGGALIGLAL
WLILRQAPAAQPQADPRRS