Protein Info for Psest_1838 in Pseudomonas stutzeri RCH2

Annotation: capsular exopolysaccharide family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 738 transmembrane" amino acids 31 to 57 (27 residues), see Phobius details amino acids 444 to 463 (20 residues), see Phobius details PF02706: Wzz" amino acids 16 to 105 (90 residues), 58.7 bits, see alignment E=1.5e-19 PF23607: WZC_N" amino acids 109 to 221 (113 residues), 107.8 bits, see alignment E=1e-34 PF13807: GNVR" amino acids 385 to 466 (82 residues), 104.9 bits, see alignment E=4.1e-34 TIGR01007: capsular exopolysaccharide family" amino acids 526 to 729 (204 residues), 181.1 bits, see alignment E=9.7e-58 PF01656: CbiA" amino acids 548 to 719 (172 residues), 35.6 bits, see alignment E=2.1e-12 PF13614: AAA_31" amino acids 556 to 694 (139 residues), 56.8 bits, see alignment E=7e-19

Best Hits

Swiss-Prot: 41% identical to EPSB_RALSL: Putative tyrosine-protein kinase EpsB (epsB) from Ralstonia solanacearum

KEGG orthology group: None (inferred from 95% identity to psa:PST_2493)

Predicted SEED Role

"Tyrosine-protein kinase Wzc (EC 2.7.10.2)" in subsystem Colanic acid biosynthesis (EC 2.7.10.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.10.2

Use Curated BLAST to search for 2.7.10.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GM26 at UniProt or InterPro

Protein Sequence (738 amino acids)

>Psest_1838 capsular exopolysaccharide family (Pseudomonas stutzeri RCH2)
MTTMPRPIYETKEDKDIDLAHLFDTFINNRVLIMSITGFFAALGIAYALLATPVYLASAM
IQIEPKSGLPSLTDVVNTNPPVSPAQTEIALLKSRSVVGGAVSKLNLDINITPHHFPIIG
GFMARRFEPSEEGELGWHPAGLGGYAWGGETLKVTQLEVPDKVHGKELTLEAAENNGFIL
RDQDGEVVVQGVVGEPVENEGYRVTVGELNARPGTTFTVVKNRTYNTTESFQQRLSAAER
GKQSGIVNVTLEDTDPAHAIRVLEEVANLYVEQNIARNAAEATQSLEFLNEQIPTVRRNL
EAAQTALNKYQTGSRSVDITAETQSVLDRIVDMERQISEQNLKRTEMERRFTRQHPNFQA
LMNQINQLQMQKEELEKQIGTLPSTQQELLRLTRDVEVSSETYSMLLNKTQELDIIRAGT
VGNVRIIDHAAADLENPVKPNKPLVVIVATLLGALLATAFVYVREALKRGVENPEDIERT
GTPVYASIPFTEKQSALEKRLANFKRDKSTASYLLTINDPADLATEAMRSLRTSLHFAMI
EAKNNVLMITGPSPAVGKSFVTTNLAAVVAQSGKRVLLIDADMRKGYLHKVMRCDGDKGL
SDILSGRITLFDAIQKTQLNNLHVITHGQLPPNPSELLMHENFSRFVKEISHMYDLVIFD
TPPILAVTDAALVGSQAGTTLMVTRYGLNGLKEIEAAKRRLEQNGLLVKGVIFNAVVRKA
STYGEYGYYQYEYASNSK