Protein Info for Psest_1832 in Pseudomonas stutzeri RCH2

Annotation: Predicted glycosyltransferases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 218 to 236 (19 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 7 to 240 (234 residues), 34.4 bits, see alignment E=2.2e-12 PF00535: Glycos_transf_2" amino acids 8 to 134 (127 residues), 52.9 bits, see alignment E=4.5e-18

Best Hits

KEGG orthology group: K07011, (no description) (inferred from 96% identity to psa:PST_2499)

Predicted SEED Role

"glycosyl transferase, family 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHZ8 at UniProt or InterPro

Protein Sequence (291 amino acids)

>Psest_1832 Predicted glycosyltransferases (Pseudomonas stutzeri RCH2)
MNVALILNYKAATETISCVESLLAHCPALNHVVVIDNDSQDGSVVAFNQWLEAKPRHNVT
LLANPENNGYAGGNNYGLRWALDNLPVTNFWIVNNDTYVDSDAFTPLLDALKENDRQFVG
SVILSADTGRLECYGGGKLYPLLGKAKLLGKDQTLEAMAQNSEQPDYLMGCSLAFSAKLV
ERIGLMDEAYFMYSEEVDWQFQAKKKGISIRVVPSSRLFHYGSLSSGGRSAFYHYYRNRA
ATRFNKRFYGQGFAFASACFLSAITVIKEFNHPSLAWSGVKGAFKGVTMSV