Protein Info for Psest_1791 in Pseudomonas stutzeri RCH2

Annotation: ABC-type transport system, involved in lipoprotein release, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 327 to 351 (25 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details PF12704: MacB_PCD" amino acids 25 to 234 (210 residues), 61.9 bits, see alignment E=1.1e-20 PF02687: FtsX" amino acids 287 to 399 (113 residues), 67.2 bits, see alignment E=1.4e-22

Best Hits

KEGG orthology group: K09808, lipoprotein-releasing system permease protein (inferred from 95% identity to psa:PST_2520)

Predicted SEED Role

"Lipoprotein releasing system transmembrane protein LolC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHV6 at UniProt or InterPro

Protein Sequence (406 amino acids)

>Psest_1791 ABC-type transport system, involved in lipoprotein release, permease component (Pseudomonas stutzeri RCH2)
MRLANSLWTEWKIALRFLLDNRMQTLLITFGIAVGSAVIVFITALITGLQANVVERTLGT
QAHIRILPPDEVNRILPSDDDSWSLVLESPRAQRLRSIINWQDIRDVLDQDAQILAVSPV
ISGPAIARRGVARASVALLGIDPPRYQRIIPLANDLIAGRFVVGAGNAVIGKELARDLGL
GIGDKLRLDAGEGREAVVDVAGIFELGVRELDARYVYLDLKQAQTLLDLPGGITVIDTTV
AEIFEADRIARRLARLTGLRAESWMETNGQLLNALSSQSMTTEMIRVFVGISVAFGIASV
LAVSVVQRTREIGILRAMGSPRGQILRVFLLQGGLLGLLGSACGGGVGWGLVQVFNLFGP
RLFEIPVDPTLVPLAMLVATITGVLAAAMPARRAARYDPAVAIRYV