Protein Info for HP15_1698 in Marinobacter adhaerens HP15
Annotation: NADH-dependent flavin oxidoreductase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 72% identity to cti:RALTA_B0456)Predicted SEED Role
"2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)" (EC 1.3.1.34)
Isozymes
Compare fitness of predicted isozymes for: 1.3.1.34
Use Curated BLAST to search for 1.3.1.34
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See E4PN13 at UniProt or InterPro
Protein Sequence (400 amino acids)
>HP15_1698 NADH-dependent flavin oxidoreductase (Marinobacter adhaerens HP15) MLPNGTQVPNRIAKAAMEENMADSNFAPSEGLIQLYRAWAEGGSGLLISGNVMIDRRAMT GPGGVVLENDDQLPLFKRWADTGRARGAQFWMQINHPGRQMPGDLAQETWAPSPISVDLG KMSKHFNPPRELTEEKIQDVIARFIETARLAEQAGFTGVEVHGAHGYLISQFLSPLTNKR RDQWGGSLENRARLLIEVVRGIRAAVSPDFAVAVKLNSADFQRGGFSQDDARQVVSMLNP LGVDLVELSGGSYEAPAMHGGARDGRTLAREAYFFEFAKDIQAFARMPVMVTGGVRRLPV AEQVVSSGVDMVGIATALAIDPNLPRDWENGRNSAPELSPITWKNKPLASLAYMSVVKYQ LLKHSLGKPAKPEVSPLWALACGQLNNTVRSRRYRRKMAA