Protein Info for HP15_1679 in Marinobacter adhaerens HP15

Annotation: pirin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 PF02678: Pirin" amino acids 10 to 95 (86 residues), 60 bits, see alignment E=2.2e-20 PF05726: Pirin_C" amino acids 155 to 255 (101 residues), 56.7 bits, see alignment E=2.8e-19

Best Hits

KEGG orthology group: K06911, (no description) (inferred from 45% identity to avr:B565_1636)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PMZ4 at UniProt or InterPro

Protein Sequence (259 amino acids)

>HP15_1679 pirin (Marinobacter adhaerens HP15)
MGFRHGQFYGAMDPFIMVDHYTMTAPTFGAHPHAGLSAVTVLFEDTEGKFNNRDSLGNDF
DINPGDLYWLNAGSGAVHDEAPREGATIHGLQVFVNLPGRMKHQAPSSLHVKREDMPTLN
GPGYRVRLVLGRSNGVETDAASVWPATILDGFADKTSLFEHRIQTGFNAWIYSVEGDIEF
HVRGEWFTLHQGESSAIDGAEGEALTIRGKSSSSSHFAVLSGETINENFVQYGPFAMSTQ
QEIDEVVARYNAGELGSLV