Protein Info for HP15_1665 in Marinobacter adhaerens HP15

Annotation: transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 PF00126: HTH_1" amino acids 6 to 63 (58 residues), 65.8 bits, see alignment E=2.8e-22 PF03466: LysR_substrate" amino acids 93 to 293 (201 residues), 87.4 bits, see alignment E=9.4e-29

Best Hits

KEGG orthology group: None (inferred from 36% identity to bgl:bglu_2g16900)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PMY0 at UniProt or InterPro

Protein Sequence (317 amino acids)

>HP15_1665 transcriptional regulator, LysR family (Marinobacter adhaerens HP15)
MKTQELQLLYIFDAIMTERSVTRAADRLSMTQPAVSNAISRMRQIWNDPLFVRKGRNIEP
TSYALSLWDQVGDHMYALTNAVSATQFDPATSKRKFRIAVTDVTVEMIWRQLIELLEDQA
PGVDIHAVPYTPEGTYEDLREAHVDLAVGMLTQHDHSLRSTWLFEGGYVLAMRADHPLAG
RQITMEEFLEARHLLVTMSGDAHGFVDSYLDQKGQNRRIAATVNHFSIVPQVLRDSNLIA
AVPELISQDCGFVDGLWMGQLPFEVDPTSLYLIWHTRHDRDPGIVWLRNHVERLLRERWH
DIMTNSPCGRSAVKAIA