Protein Info for HP15_1647 in Marinobacter adhaerens HP15

Annotation: DoxX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 69 to 90 (22 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details PF07681: DoxX" amino acids 26 to 108 (83 residues), 59.2 bits, see alignment E=2.5e-20

Best Hits

KEGG orthology group: None (inferred from 57% identity to cps:CPS_0809)

Predicted SEED Role

"INTEGRAL MEMBRANE PROTEIN (Rhomboid family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PM83 at UniProt or InterPro

Protein Sequence (151 amino acids)

>HP15_1647 DoxX (Marinobacter adhaerens HP15)
MKTLAYSFYGLNDSVQRIVGGMLPVALLLGRLYVAWIFFKAGLTKIDDWGTTLFLFEEEY
SVPLLSPEIAAFLATFGELVFPVLLVIGLFSLVSSLGLFVINIVAVISLEMIAPAAELYH
VVWGLILMALAMCGPGLLSLDKLVGNRVRRA