Protein Info for Psest_1718 in Pseudomonas stutzeri RCH2

Annotation: flagellar hook-basal body complex protein FliE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 109 TIGR00205: flagellar hook-basal body complex protein FliE" amino acids 19 to 108 (90 residues), 85.8 bits, see alignment E=1.3e-28 PF02049: FliE" amino acids 25 to 109 (85 residues), 104.9 bits, see alignment E=1e-34

Best Hits

Swiss-Prot: 96% identical to FLIE_PSEU5: Flagellar hook-basal body complex protein FliE (fliE) from Pseudomonas stutzeri (strain A1501)

KEGG orthology group: K02408, flagellar hook-basal body complex protein FliE (inferred from 96% identity to psa:PST_2591)

Predicted SEED Role

"Flagellar hook-basal body complex protein FliE" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKF1 at UniProt or InterPro

Protein Sequence (109 amino acids)

>Psest_1718 flagellar hook-basal body complex protein FliE (Pseudomonas stutzeri RCH2)
MSQGVQFNRLMLEMRAMQTDAMARAKPEVKTQEVGAPSFSDMLGQAVNKVHETQQVSSQI
SSAFEMGQGGVDLTEVMIASQKASVSFQAMTQVRNKLVQAYQDIMQMPV