Protein Info for Psest_1717 in Pseudomonas stutzeri RCH2

Annotation: benzoate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 129 to 147 (19 residues), see Phobius details amino acids 153 to 170 (18 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 210 to 233 (24 residues), see Phobius details amino acids 255 to 279 (25 residues), see Phobius details amino acids 299 to 322 (24 residues), see Phobius details amino acids 326 to 347 (22 residues), see Phobius details amino acids 359 to 391 (33 residues), see Phobius details PF03594: BenE" amino acids 14 to 389 (376 residues), 527.1 bits, see alignment E=1.2e-162 TIGR00843: benzoate transporter" amino acids 15 to 391 (377 residues), 428.3 bits, see alignment E=1.4e-132

Best Hits

Swiss-Prot: 40% identical to BENE_ACIAD: Benzoate membrane transport protein (benE) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 93% identity to psa:PST_2592)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJT4 at UniProt or InterPro

Protein Sequence (395 amino acids)

>Psest_1717 benzoate transporter (Pseudomonas stutzeri RCH2)
MTEISRTALRPLSDSSPSTIVAGFIAMLTGYTSSLVLMFQAGQAAGLSAAQISSWIWALS
IGMAICSVGLSLRFRTPVVVAWSTPGAALLITSLPGVPYGEAIGAFIFASALIALCGLTG
SFERLMRRVPASLAAALLAGVLFNIGIEIFKAVEVQPVLVLGMFFSYLLAKRLQPRYAVL
AALLVGCLIAGVSGLLDFQRFSLQVAIPVWTTPALSFAAIFSIGIPLFVIAMASQNMPGL
AVLRAEGYQVPASPLISTTGIASVLLAPFGSHGIHLAAITMAICAGPEAHPDPNKRYTAA
AWCGVFYGIAGIFGATLAALFAAFPAALVLSVAALALLGSIGSGLTQAMQQPSEREAALI
TFMVTASGLTLFGIGAALWGLIAGVLTLVILSRRS