Protein Info for HP15_1628 in Marinobacter adhaerens HP15

Annotation: peptidoglycan-binding domain 1 protein-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF01471: PG_binding_1" amino acids 41 to 90 (50 residues), 46.2 bits, see alignment 2e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PM64 at UniProt or InterPro

Protein Sequence (373 amino acids)

>HP15_1628 peptidoglycan-binding domain 1 protein-like protein (Marinobacter adhaerens HP15)
MTRSQSLRKQGARGPAIVILTAAACLGTAQAAEPEKVIFAAENALYGAGHDIGRADGWID
EQLRAAIRAYQAQNGLQTNGNLDTATLKALGVTKTSSATITANSVGSRKASVAQLGLSLP
KPASNTPTIARAEPEPAPAPEPTPDPIQKSSEQGKPTTSLDGEPDENQIVTEGTSKSTEV
KPQEKVAEAAPTPPEPVASERPAPTSAPAPTPEPAVAEETTPEATKEPDPVLAQLPAEPT
SAGPAEPKVTETKKAQPIEGENTASTNSAVADNSQSTGGGFFSVLFDFFLVGWCERQLCN
RSLKTFQSITLPSESKWTYPRKLGSSSQAFTKPTVSPESETISKASLRALAMSLSGSVSE
RLRLTEESKGKLL