Protein Info for HP15_1618 in Marinobacter adhaerens HP15

Annotation: uncharacterized conserved protein UCP026166, sodium bile acid symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 49 to 73 (25 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 121 to 139 (19 residues), see Phobius details amino acids 150 to 174 (25 residues), see Phobius details amino acids 186 to 207 (22 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details PF13593: SBF_like" amino acids 6 to 239 (234 residues), 255.8 bits, see alignment E=6.4e-80 PF01758: SBF" amino acids 16 to 139 (124 residues), 36 bits, see alignment E=5.8e-13

Best Hits

Predicted SEED Role

"Putative sodium/bile acid symporter family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PM52 at UniProt or InterPro

Protein Sequence (251 amino acids)

>HP15_1618 uncharacterized conserved protein UCP026166, sodium bile acid symporter (Marinobacter adhaerens HP15)
MLPINGLSNIAPSWMPKDLGLGFLYLGVLPSAVSSSIAYTAMARGNVPAAICSAAASNVF
GMMLTPFLLLLLVSTSGGGDFSVAEALKDIILQLLLPFAVGHALRPWLGGFLGRNETLMA
RYDQCVIWLIVYSAFSHSVESGLWENLPLQAILFAIALCLGLLLLFMVFARFLVRRFGFS
LEDEAAVVFCGSKKSLASGLPMAKVLFSGHPGFGMIVLPIMCYNQIQVIVGAFLAQKYRD
KIERANAEKTG