Protein Info for PGA1_c16530 in Phaeobacter inhibens DSM 17395

Annotation: putative branched-chain amino acid transporter, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 PF00005: ABC_tran" amino acids 27 to 182 (156 residues), 110.4 bits, see alignment E=1.2e-35 PF12399: BCA_ABC_TP_C" amino acids 229 to 255 (27 residues), 42.4 bits, see alignment (E = 4.1e-15)

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 70% identity to sit:TM1040_2234)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EX26 at UniProt or InterPro

Protein Sequence (256 amino acids)

>PGA1_c16530 putative branched-chain amino acid transporter, ATP-binding protein (Phaeobacter inhibens DSM 17395)
MTDPTGAKQVLEVRDLSKSFGALQASKNISLDLRAGEIHALIGPNGAGKSTLIKQISGEL
RPDSGSVSLLGHPVDDLSRVARARMGLGRTFQISALAMDFTVLQNAVLGALGARGGVFRF
LGNVMRDKALVAQAEHALERVGLLSDAKRRTADLSHGQRRQLEVAVALTLQPRLFLMDEP
MAGLGAGGSQALTGFLNTLRHEAPILLVEHDMDAVFALADRISVLVYGEVIATGTTDEIR
NNAEVRRAYLGEEEAV