Protein Info for Psest_1632 in Pseudomonas stutzeri RCH2

Annotation: Predicted permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 98 to 116 (19 residues), see Phobius details amino acids 132 to 162 (31 residues), see Phobius details amino acids 168 to 191 (24 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details PF01925: TauE" amino acids 9 to 242 (234 residues), 156.3 bits, see alignment E=5.7e-50

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 95% identity to psa:PST_2677)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GK70 at UniProt or InterPro

Protein Sequence (251 amino acids)

>Psest_1632 Predicted permeases (Pseudomonas stutzeri RCH2)
MDVLLLEALGIGLILGLLLGLTGAGGSLVALPLLLSLHLPLRDAIGVSLGAVAMSALIGA
IPRARLGQVAWRPVMLLAICGLPGNAAGQWLGQFIPERALIIGFCLLVLWSAWRMWRGAS
LPAKENVEDHQLALLGIGVGVGLLSGLMGVGGGFLIVPALLWFTSLSLLSAMATSMAVIA
VVSGGGFLLYLSDAEPPLPLLGGLALGGAIGVLAGNRLAQYLNSSLLQRLFALMLVIVSL
SLGVQKLLLGH