Protein Info for PGA1_c16150 in Phaeobacter inhibens DSM 17395

Annotation: Predicted secreted hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF07143: CrtC" amino acids 66 to 240 (175 residues), 206.5 bits, see alignment E=4.6e-65 PF17186: Lipocalin_9" amino acids 243 to 363 (121 residues), 131.2 bits, see alignment E=2.6e-42

Best Hits

KEGG orthology group: None (inferred from 61% identity to avi:Avi_6286)

Predicted SEED Role

"AttH component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EZE1 at UniProt or InterPro

Protein Sequence (368 amino acids)

>PGA1_c16150 Predicted secreted hydrolase (Phaeobacter inhibens DSM 17395)
MNVKRILAAVVSKFTLAVTLLAPLAAPAAAQGYAGLGTEADGFAVPVPGRPLVFPRDHAA
HPDYRIEWWYLTANLTGDDGRDYGVQWTLFRSALRPDGDRQADTASVWTDPQIWMGHAGL
TTPDAHYSAERLARGGIGQAGVAAAPFEAYIDDWHMRSSDQNLQDLTLRATGESFRYDLS
LSAEGPLVMQGDAGYSVKSADGQASYYYSQPHYQVTGTLDLPDGPVSVTGKGWLDREWSS
QPLSEDQSGWDWFSLRFESGEKLMGFQLRGARLFTSGTWIAADGTPTPLEPGSLQATPVT
LTQVAGRKVPTEWQLRLLSRDLDVRVTAINPQAWMAMSFPYWEGPVRLSGSHLGKGYLEM
TGYGTLAD