Protein Info for PGA1_c16140 in Phaeobacter inhibens DSM 17395

Annotation: putative lipoprotein transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 819 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details transmembrane" amino acids 239 to 262 (24 residues), see Phobius details amino acids 282 to 314 (33 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 385 to 404 (20 residues), see Phobius details amino acids 410 to 433 (24 residues), see Phobius details amino acids 458 to 481 (24 residues), see Phobius details amino acids 684 to 709 (26 residues), see Phobius details amino acids 738 to 761 (24 residues), see Phobius details amino acids 781 to 799 (19 residues), see Phobius details PF02687: FtsX" amino acids 241 to 362 (122 residues), 32.7 bits, see alignment E=6.6e-12 amino acids 690 to 808 (119 residues), 41.2 bits, see alignment E=1.5e-14 PF12704: MacB_PCD" amino acids 461 to 655 (195 residues), 36 bits, see alignment E=9e-13

Best Hits

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7E0V1 at UniProt or InterPro

Protein Sequence (819 amino acids)

>PGA1_c16140 putative lipoprotein transport protein (Phaeobacter inhibens DSM 17395)
MIGATFSAILSHWRLHPLQLAMLVTGLALATALWSAVQAINAEARASYAEAAARISPSGQ
TYLTNQNGYIKLGQYVELRREGWQLSPVLIGTLTEDTAEAGPADIEVIGIDILSHPMMAR
LAATDTSSEEGAQEALTPADLLLAPGHLFAHPDSDLDLLSRNLPPVTRTTTVPRDVVIGD
ISTVARLLGKPFLISRLVVLDEQPIGLRPLSELAPHLRLQTASTGADTAQLTRSFHLNLT
AFGLLSFAVGLFIVQGTIALGIEQRRGLFRTLRSLGVPLNTLVGLIFAELLVITILAALL
GLFLGYLIAAALLPGVGATLSGLYGASLDGSLQLRLGWVFSGLAMALAGMALAGAQSWVS
LSRLPILAAPAAAARGQQALRGHRLSALSGALLVLGAAAMPALFDGLLAGFAFLAGLMLG
AALLLPLALSRLASVGVQLARRPVTLWLWADMRAQLPGLSLALMALLLALATNIGVGTMV
SSFRLTFLGWLDQRLASELYMTLPQEDMAHDVLPWLADRGIRALPIRHSDERYVGTEGTG
APMEVYGVVDDATYRDNWPLLQAEPTVWQQLAEGRGALINEQLARRADLGPGDTLMIAPD
WRMQIAGVYSDYGNPNPQAIVGLETLLLHRPSIENRRFGLRLPPADVAEVRAVLQREFGL
PRSAFIDQSALKAQSLAIFDRTFVVTGALNLLTFGVAGFAMLTSLLTLWSQRLPQLAPIW
AMGLTRGQLARYEILRSVILAGLTALLALPLGLLLGWALLAVVNVEAFGWRLPMSLFPLD
WLQLLLMALIAAALAAALPARRLSKLKPADLLRVFANER