Protein Info for PGA1_c16130 in Phaeobacter inhibens DSM 17395

Annotation: putative lipoprotein-releasing system, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF00005: ABC_tran" amino acids 21 to 166 (146 residues), 120.5 bits, see alignment E=4.2e-39

Best Hits

Swiss-Prot: 42% identical to Y986_MYCTU: Uncharacterized ABC transporter ATP-binding protein Rv0986 (Rv0986) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

KEGG orthology group: K02003, (no description) (inferred from 64% identity to sil:SPO2181)

MetaCyc: 39% identical to lipoprotein release complex - ATP binding subunit (Escherichia coli K-12 substr. MG1655)
RXN-22427

Predicted SEED Role

"AttE component of AttEFGH ABC transport system"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EM67 at UniProt or InterPro

Protein Sequence (236 amino acids)

>PGA1_c16130 putative lipoprotein-releasing system, ATP-binding protein (Phaeobacter inhibens DSM 17395)
MLIIEDLYKSYQGPSGDVPVLNGVSLQLGPGHSLALTGDSGSGKSTLLHLAAALDQADSG
RIMVDGISLEELDDTGRAALRRQQVSLVFQQFNLVPALTVAQNISLHARLAGRVDPVWIK
ALTERLGLAEFQERYPEQLSGGQQQRVAIARALAMRPKLLLADEPTGNLDEGSSASVMAL
MLDLVRETGAALLLVTHSQAIAELLDQQRHLSKGRLRDDRSCDGTLSDGNLREGKA