Protein Info for HP15_159 in Marinobacter adhaerens HP15

Annotation: membrane protein containing cytochrome c assembly protein, transmembrane region domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 50 to 76 (27 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 127 to 153 (27 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 205 to 230 (26 residues), see Phobius details PF02683: DsbD" amino acids 12 to 219 (208 residues), 194.8 bits, see alignment E=8.7e-62

Best Hits

KEGG orthology group: None (inferred from 90% identity to maq:Maqu_3250)

Predicted SEED Role

"Cytochrome c-type biogenesis protein CcdA (DsbD analog)" in subsystem Biogenesis of c-type cytochromes or Experimental tye or Periplasmic disulfide interchange or Sulfur oxidation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PJA4 at UniProt or InterPro

Protein Sequence (240 amino acids)

>HP15_159 membrane protein containing cytochrome c assembly protein, transmembrane region domain (Marinobacter adhaerens HP15)
MPDLATWGTLAAFLGGLVSFFSPCTLPLVPGYLSVVTGGAVSEASNRLKAFWLSLCFVMG
FSLVFVALGASASLLGQWLMAYRQEANLVAGTLIVLMGLFMLGWWSMPALQRDWRLGQTL
EGGRPTAAFVLGVAFAVGWTPCIGPILGAILALSSTHANAETGMLYLAIYSLGLALPFLG
TALFIEHFRKRVRGLSRWSRFLRALAGLVLIVMGVMVLTGQMTLFATWMLSTFPVLGKLG