Protein Info for Psest_1573 in Pseudomonas stutzeri RCH2

Annotation: Putative effector of murein hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 40 to 59 (20 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 99 to 125 (27 residues), see Phobius details amino acids 154 to 178 (25 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details PF04172: LrgB" amino acids 24 to 234 (211 residues), 242.4 bits, see alignment E=1.7e-76

Best Hits

Swiss-Prot: 35% identical to YWBG_BACSU: Uncharacterized protein YwbG (ywbG) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 96% identity to psa:PST_2728)

Predicted SEED Role

"LrgA-associated membrane protein LrgB" in subsystem Murein hydrolase regulation and cell death

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHB4 at UniProt or InterPro

Protein Sequence (236 amino acids)

>Psest_1573 Putative effector of murein hydrolase (Pseudomonas stutzeri RCH2)
MTVLDWQTAWAAVVVHPLFSVALTLIAFQLALMLYRRSGWLVLQPVMVGMLLVVGTLTLV
DLDYARYREGASLVAMLLGPATVALAVPLHRHLKRIQQLFWPIVITLAVGGVLSVVLTLA
IAWALGAQMPVLMSLAPKSATMPIAMLVAEQLGGLASLAAVFVMLTGVIGTALGPLLLRW
AGVDHPAARGLSYGINAHAIGTARALEEGDECGAFAALGMSLLGILIALLLPFALG