Protein Info for Psest_1566 in Pseudomonas stutzeri RCH2

Annotation: Cation/multidrug efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 336 to 355 (20 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 427 to 451 (25 residues), see Phobius details amino acids 464 to 487 (24 residues), see Phobius details amino acids 534 to 552 (19 residues), see Phobius details amino acids 865 to 884 (20 residues), see Phobius details amino acids 891 to 911 (21 residues), see Phobius details amino acids 917 to 937 (21 residues), see Phobius details amino acids 965 to 985 (21 residues), see Phobius details amino acids 991 to 1016 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1013 (1007 residues), 566.1 bits, see alignment E=7e-174

Best Hits

KEGG orthology group: None (inferred from 71% identity to abo:ABO_2522)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJE6 at UniProt or InterPro

Protein Sequence (1026 amino acids)

>Psest_1566 Cation/multidrug efflux pump (Pseudomonas stutzeri RCH2)
MRFNLSAWALQNRQIVVYLMLLLAIVGALSYSKLGQSEDPPFTFKAMVIQTQWPGATAEE
MSRQVTERIEKKLMETGEYERIVSFSRPGESNVTFMARDSMRSKDIPDLWYQIRKKIGDI
QHTFPPGVRGPFFNDEFGTTFGNIYALTGSGFDYAILKDYADRIQLQLQRVKSVGKVELI
GLQDEKIWIELSNVKLATLGVPLEAVRQALEAQNAVTAAGFVETISDRVQLRVTGSFETV
KQIRDFPIRVAGRTFRIGDVAEVHRGFNDPPAPRMRFMGEPALGLAVSMKSGGDILVLGQ
ALEQEFARLQQELPAGMQLRKVSDQPAAVKTGVGEFVKVLIEALVIVLLVSFFSLGVRTG
LVVALSIPLVLAMTFAAMSYLDIGLHKISLGALVLALGLMVDDAIIAVEMMAIKMEQGYD
RLKAASFAWTSTAFPMLTGTLITAAGFLPIATANSSTGEYTRSIFQVVAISLIASWIAAV
MFVPLIGEKLLPDLAKKTAHKHGTSSEGHDPYATPFYQRVRRLVTFCVRRRKTVILLTLA
IFAAAVVLFRLVPQQFFPASGRLELMVDLKLAEGASLKATEAEVRRLEELLKERAGIDNY
VAYVGTGSPRFYLPLDQQLPATSFAQFVVLADSIESREALRSWLIERMREDFPSLRGRVT
RLENGPPVGYPVQFRVTGEHIDVVRGLARQVAAKVNENPHVANVHLDWQEPSKMVRLNVD
QDRARALGVTTAELSGFLRRTFTGSSVSQFREDNELIEILLRGTERERLELSMLPSLAIP
TESGRSVPLSQVATLEYGFEEGVIWHRNRLPTVTVRADVYGEQQPAALVREIEPTLAEIR
DQLPGGYLLEVGGTVEDSERGQRSVNAGMPLFVIVVLTLLMAQLKSFSRSAMVFLTAPLG
IIGVALFLLLFGQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIGAGQARFSAIVEATV
RRFRPIVLTALASVLAMIPLSRSIFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVRE
DEASAR