Protein Info for Psest_1561 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 286 PF01904: DUF72" amino acids 23 to 260 (238 residues), 172.9 bits, see alignment E=5.3e-55

Best Hits

Swiss-Prot: 41% identical to YECE_ECOLI: UPF0759 protein YecE (yecE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 82% identity to psa:PST_2741)

Predicted SEED Role

"FIG003003: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJE1 at UniProt or InterPro

Protein Sequence (286 amino acids)

>Psest_1561 Uncharacterized conserved protein (Pseudomonas stutzeri RCH2)
LPELPYYLGCPSWNESAWLGALYPTGTSASDFLATYCSVFNSVEGNTTLYAWPSEEKVRR
WAGQMPAGFRFCAKFPREISQASDLHSALEQARAFRQLLLPLGRRVTPFWLQLPASVGPS
RLGELAAFIDGFVEPLAIEVRHPAFFDKGEGERALNRLLRDRGVERICLDTRALFSCQSA
DPALLHAQSKKPRLPVRPVAFSDSPQLRFVGHPEPAMNDVFMTPWLDKVAGWIEAGKAPH
VYLHTPDNHRAPELAMRFHRLLSERLPGLPALPSLQVAPQLSLLAD