Protein Info for Psest_1540 in Pseudomonas stutzeri RCH2

Annotation: biotin-dependent carboxylase uncharacterized domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00724: biotin-dependent carboxylase uncharacterized domain
  • amino acids 5 to 296 (292 residues), 246.5 bits, E=1.7e-77
• PF02626: CT_A_B
  • amino acids 25 to 284 (260 residues), 269.8 bits, E=1.4e-84

Best Hits

KEGG orthology group: None (inferred from 90% identity to psa:PST_2763)

Predicted SEED Role

"Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54)" (EC 3.5.1.54)

MetaCyc Pathways

• L-arginine degradation V (arginine deiminase pathway) (4/4 steps found)
• L-citrulline degradation (3/3 steps found)
• cyanate degradation (3/3 steps found)
• urea degradation I (3/3 steps found)
• superpathway of allantoin degradation in yeast (5/6 steps found)
• cyanuric acid degradation II (4/5 steps found)
• cyanuric acid degradation I (2/5 steps found)
• uracil degradation III (2/5 steps found)
• superpathway of atrazine degradation (4/8 steps found)
• allantoin degradation IV (anaerobic) (2/9 steps found)

KEGG Metabolic Maps

• Arginine and proline metabolism
• Atrazine degradation
• Urea cycle and metabolism of amino groups

Isozymes

Compare fitness of predicted isozymes for: 3.5.1.54

Use Curated BLAST to search for 3.5.1.54

Sequence Analysis Tools

See L0GL22 at UniProt or InterPro

Protein Sequence (303 amino acids)

>Psest_1540 biotin-dependent carboxylase uncharacterized domain (Pseudomonas stutzeri RCH2)
MSLLIEQAGALATLQDAGRSGVRQLGVTQGGAVDWLSHGWANWLLGNPQQASTVEITLGN
FSLRAQADTCLALCGADLGATLDGEPLMPGRAFSIRQGQTLIFSQPRQGVRAYLAAPGGF
SAPEVLGSSATVRREQLGGLNGDGQPLAKGDLLHWRGHATTMRTLPELPLVPPPGIGLSV
VLGAQIGDFTGQSLFDAFNSDWTVDQRADRMGVRLLGPPLRCARSSMISEGVPLGAIQVP
ADGQPIVLLNDRQTIGGYPRLGALTPQAVAQLAQCLPGTTLRLKPIALEAAQRQHKALLG
QWQ