Protein Info for HP15_1418 in Marinobacter adhaerens HP15

Annotation: membrane protein containing DUF214, permase predicted

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 844 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 249 to 276 (28 residues), see Phobius details amino acids 297 to 327 (31 residues), see Phobius details amino acids 349 to 376 (28 residues), see Phobius details amino acids 398 to 417 (20 residues), see Phobius details amino acids 423 to 441 (19 residues), see Phobius details amino acids 480 to 502 (23 residues), see Phobius details amino acids 718 to 740 (23 residues), see Phobius details amino acids 773 to 794 (22 residues), see Phobius details amino acids 806 to 827 (22 residues), see Phobius details PF02687: FtsX" amino acids 255 to 367 (113 residues), 34.1 bits, see alignment E=2.4e-12 amino acids 724 to 837 (114 residues), 40.8 bits, see alignment E=2.1e-14

Best Hits

Predicted SEED Role

"ABC transporter, permease protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PK85 at UniProt or InterPro

Protein Sequence (844 amino acids)

>HP15_1418 membrane protein containing DUF214, permase predicted (Marinobacter adhaerens HP15)
MLRFAITDLRSRISALKIFLACLILGVTLVAATASLYRVIEQSLLADTRALLGGDVELDT
SEPLPDDALEWIRATGKISLVREFDTIVSGSGGDGFFRAEILVPDALYPLYGELELMPDE
PLGALTGQKEGQWGAIIDPLLAERLGQSIGDQIEIGAATFRISGLIEKQPDRSLNANWRG
LPIMISEQAVEATGLIRPGSRVDYEYRVQTEQNLDTWLEEFEQAFPDARWEITTFAERSE
RISERLDQIATALILIAFTTLFIGGLGVANSIHAYLDEKLGTIATLQTLGLRRKPLVGIY
LLQIGVLGSLAGLIGGSIGLGLSALAISLAGDAFALAGPDGAGGWLSLWLVPLLLSWLFA
VLTAYVFALPALARALAAAPAGLFRGQVEAAPNEPRSWRIASYLLLAVYIGATLFWLPSP
HLGFLFLLAVTLLWGLLEGLIKGLRRGAKALENGGFADRRFARRLALANLHRPDSPLRAT
LLSLGTALTLVVACTLMVTTLLRALETTIPEQSPALILYEVFPDQMEPLQNGLEAVDASS
RVELLPMVRSRLDTINQKPIAEVLADNAEARREAMGDEYKLSYLSGNPEALELVEGSWWE
SPAPEGEPAYMAMEDREAYQLGLGVGDQLTFTAQDKSIDVEIRAIYRQKGLQTRFWFEGI
LQQDALDDLISLYVGAVYQSDEAARESQQWLAQNIPNVITLRTADWLETAGDLLNKAAAG
LAAVASVSLLASLLVLSSVVSVSRRRQLYEANLLHCLGARHGAIRQSMLLETGLLTFLAT
VFATALGALIALPVADLALKLPAGDLWWIGALVAGGVSSLALLGGLLPTLRAMRLNPAVL
LRDR