Protein Info for HP15_1414 in Marinobacter adhaerens HP15
Annotation: histone deacetylase superfamily protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 64% identity to aeh:Mlg_2048)Predicted SEED Role
"Acetylspermidine deacetylase (EC 3.5.1.48); Deacetylases, including yeast histone deacetylase and acetoin utilization protein" (EC 3.5.1.48)
Isozymes
No predicted isozymesUse Curated BLAST to search for 3.5.1.48
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See E4PJJ2 at UniProt or InterPro
Protein Sequence (368 amino acids)
>HP15_1414 histone deacetylase superfamily protein (Marinobacter adhaerens HP15) MIGDRSVNVFYDEIMLGHNPEVDLPFMPSRVEKRVRSILQGLDFKWSYPEHPGRISAIKE YLDENPVAGTQFKSGAAAATYDQLARVHTTSYLDHIFSLDGKRAWLDKDTTAVSPDSIKA ATAAAGNAIAAVESVVKGECNSAFALIRPPGHHAEPVRARGFCLLNNVAIAAAHAQAKLG CEKILIIDWDAHHGNGTQDIFWADPDVLFFDTHCAAPFYPGSGHLEEIGDGLGEGYTINV PLPETAGDVAFEKVFREILMPAADYFQPDLVLVSAGFDPHRNDMALNLTYDGFKVITGIV QAIADKHCEGRLALVLEGGYSLSSLSKGVHAVLEVLAGGEVPEVHEIGVPEAEEAAEFHR SAFSDDQE