Protein Info for PGA1_c14170 in Phaeobacter inhibens DSM 17395

Annotation: putative binding-protein-dependent transport system inner membrane component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 217 to 234 (18 residues), see Phobius details amino acids 271 to 297 (27 residues), see Phobius details amino acids 317 to 343 (27 residues), see Phobius details PF00528: BPD_transp_1" amino acids 150 to 348 (199 residues), 109.4 bits, see alignment E=9e-36

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 87% identity to sit:TM1040_1418)

Predicted SEED Role

"Oligopeptide/dipeptide ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EYX8 at UniProt or InterPro

Protein Sequence (350 amino acids)

>PGA1_c14170 putative binding-protein-dependent transport system inner membrane component (Phaeobacter inhibens DSM 17395)
MGLFILRRTGVMILTALCLTFIVFILTNLYPNLEKLAKTEGNFRMSDEAVASWLDKNGYL
QPMPVKYGQWLGVLPGWRTTTDEGITGRCITGVVTAEEAEDAPSFCGVLQGDWGYSTRFK
DEVWTIIQTRLGNTAFLMMWVLILMVPSALLIGVLAGMREGSVTDRSLSTASILTTATPE
YVSGVIFIAVFTSSTVGLKWFKGTATSAMKDANFENFFLPVLTIALYGIGYIARMTRASM
TEVMTAQYIRTARLKGVSFPKIVMRHALRNALIAPFTVIMLQFPWLLNGVVIVETLFNYK
GFGWALVEAAGNNDIELLLGISVVSVVVVLLTQLISDIGYVYLNPRIRIS