Protein Info for Psest_1398 in Pseudomonas stutzeri RCH2

Annotation: ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF00005: ABC_tran" amino acids 34 to 174 (141 residues), 118.9 bits, see alignment E=2.6e-38

Best Hits

Swiss-Prot: 48% identical to TAUB_RUEPO: Taurine import ATP-binding protein TauB (tauB) from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3)

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 97% identity to psa:PST_2900)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKV4 at UniProt or InterPro

Protein Sequence (267 amino acids)

>Psest_1398 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component (Pseudomonas stutzeri RCH2)
MNAAALPATPRPNISFDRVSQVFTSSDGSEVVALDNASFDIGRHEFIAVLGPSGCGKSTL
LRILAGLVRPTHGQVSIYGSPVDGPRDEIGIVFQRPTLLPWLNIRDNLTFPMRHKYGRVT
AQEITRGEELLELVGLKEFGNKRPDELSGGMQQRAAIARALLHDPEILLMDEPFSALDAL
TRDELSLELLNIWTQRPKTVLFITHSIPEALLLADRILVMSARPGRVQEIIDVDLPRPRS
METLTEPRFNELANHIRRKVFSRHADH