Protein Info for PGA1_c13780 in Phaeobacter inhibens DSM 17395
Annotation: D-alanine--poly(phosphoribitol) ligase subunit
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"D-alanine--poly(phosphoribitol) ligase subunit 1 (EC 6.1.1.13)" in subsystem D-Alanyl Lipoteichoic Acid Biosynthesis or Methicillin resistance in Staphylococci or Streptococcus pyogenes Virulome or Teichoic and lipoteichoic acids biosynthesis (EC 6.1.1.13)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 6.1.1.13
Use Curated BLAST to search for 6.1.1.13
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See I7EWC7 at UniProt or InterPro
Protein Sequence (523 amino acids)
>PGA1_c13780 D-alanine--poly(phosphoribitol) ligase subunit (Phaeobacter inhibens DSM 17395) MFETFIADLRETLLSQLDRPALITSEEVISFGSLAGRVEGILRALDDMPPGLSLIVGHKE PDCIAAMIACAIAGRAFAFADRSTPMDRLEQIASTAGASHILAFGQETLPGGLPVQTLKE LPTRTPQLELKTALSEEGTFYVIFTSGSTGTPKGVPISRGNYMALHRWYTPLLGAVRPEG AHVNHASMAFDMGMFDLWPTLSLGRPVHLLNHANNIMPRNNIRHLTRVDVASPASWASTP SLLQLMCTDPQFTAENLPDLRFFVVGGEMLPGALVQELQTRFPQAQVLNGYGPSEATCAT HLYPISVADAAADGPMKIGCAVGENRMQIIDADGEDVPAGEEGELVLSGPQVISHYLPQD HPANAALSQESGINTYRTGDLARLDVDGNLILLGRIDRQVKLLGNRIELNEIERIAEGYS AVRKAVCLPQKDAAGRVTGLQLFVEPLAGATCERDGLFAHMGKHLSAQVLPRDLRIVSAF PVTSNGKLDTRILLEGGSDLPTALPPSRDIVASDTGLMAESVK