Protein Info for Psest_1378 in Pseudomonas stutzeri RCH2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 61 to 85 (25 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 115 to 133 (19 residues), see Phobius details amino acids 151 to 170 (20 residues), see Phobius details amino acids 183 to 206 (24 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details PF13795: HupE_UreJ_2" amino acids 59 to 210 (152 residues), 186.3 bits, see alignment E=1.6e-59

Best Hits

KEGG orthology group: None (inferred from 81% identity to pba:PSEBR_a2238)

Predicted SEED Role

"putative ORF1 [Plasmid pTOM9]"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKL2 at UniProt or InterPro

Protein Sequence (243 amino acids)

>Psest_1378 hypothetical protein (Pseudomonas stutzeri RCH2)
MHSQSLRGLAAFYARLRHSLLPVFGMPLFFLASDALAHGVAEGDKGFIQESSGVMLLPFI
YMGAKHMITGYDHLLFLFGVIFFLYRLKDVALYVTLFAVGHSVTLLLGVLTEISVSAYLI
DAIIGFSVVYKALDNLGAFERWFGYQPDTRAATLVFGLIHGFGLATKILEYEIAADGLIP
NLIAFNVGVEVGQLLALSAILIAMGYWRRTAGFWRHAYTANVAMMSAGFLLMGYQLTGLI
VSQ