Protein Info for PGA1_c13480 in Phaeobacter inhibens DSM 17395

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 148 to 173 (26 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 363 to 382 (20 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 52% identity to kvu:EIO_1649)

Predicted SEED Role

"probable integral membrane protein Cj1412c"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7ELE8 at UniProt or InterPro

Protein Sequence (442 amino acids)

>PGA1_c13480 hypothetical protein (Phaeobacter inhibens DSM 17395)
MQEQTTQTSAARRPHPDPSAAPQDPPVRRRKVFYIPGYDPMPPRRYRELYRSEGATQAEI
SGYQLSLLPRPKTATETDSAGGFGWQVHAQIEGHEVDTDVDVLVWSDIVQDSMDPSIAET
YWQMVRTAWIYISTGTLRRLMWLRKGPVIAALYPVGMLLLQAVLAFLLALVIARLGQGGV
TRLGLSSPLGTGLAALVFWAAGLVAAAALLRWFRRQDGRLFAYYLMHDYAHSAALRGAYA
PELEQRIAQFAGEIAVALSDPNYDEVLVVGHSSGAHVGVSVLADVQRSGLAARHAVLGFL
SLGQVVPMVSFLPDAHRLRLDLRDLSGRGDICWVDVTAPGDGCAFALCDPVAVTGVSPPQ
KRWPLVVSAAFTQTLSPARWAALRWRFFRLHFQYLCAFDRPGDYDYFQITAGPRTLESRY
RNRNPSRSRIDVTASKYTSVGG