Protein Info for Psest_1324 in Pseudomonas stutzeri RCH2

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 47 to 67 (21 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 137 to 160 (24 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 218 to 242 (25 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 314 to 339 (26 residues), see Phobius details amino acids 351 to 374 (24 residues), see Phobius details amino acids 403 to 422 (20 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 367 (351 residues), 166.9 bits, see alignment E=6.1e-53 PF00083: Sugar_tr" amino acids 46 to 191 (146 residues), 30.5 bits, see alignment E=1.8e-11

Best Hits

KEGG orthology group: None (inferred from 96% identity to psa:PST_2972)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJA9 at UniProt or InterPro

Protein Sequence (448 amino acids)

>Psest_1324 Arabinose efflux permease (Pseudomonas stutzeri RCH2)
MQPSTQASNAWRVLFLLFLANLFNFFDRTIPAIIAEPIRLEWSLNDFQLGLIGTAFTIVY
AIAGLPLGRMADLGSRRKIMGWGLTAWSGLTAVNGLAWNFWSFLLVRMGIGIGEASYAPA
ANSLIGDLFPAHKRARAMGIFMLGLPLGLLLAFFTIGSMVEAFGSWRAPFFIAAVPGLVL
ALFIFFIKEPKRGAAETVKVSQEPVKQPMRKVLSIRTFWWLVLAGLAFNFATYACNAFMV
PLLMRYHGVSLVQASVATGVIVGLTGLFGLTLGGWVADRIHQRFARGRLIFAAVSMLIAT
IATGYALLAGRIEVGMFVAVFSIGWLFSYNFYTCVYTAIQDVVEPRLRATAMALFFAGLY
LLGGGMGTVVVGLLSDHFAEAAMLAAGASEMAEAFRAEGLHGAMYLIPASLLLTMVFLFQ
ASRTFCADAKRMTAGMTADAPGAEAVPA