Protein Info for Psest_1316 in Pseudomonas stutzeri RCH2

Annotation: Predicted transmembrane sensor domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 345 to 362 (18 residues), see Phobius details amino acids 374 to 392 (19 residues), see Phobius details amino acids 398 to 413 (16 residues), see Phobius details PF05226: CHASE2" amino acids 39 to 358 (320 residues), 68.9 bits, see alignment E=2.7e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GKM2 at UniProt or InterPro

Protein Sequence (452 amino acids)

>Psest_1316 Predicted transmembrane sensor domain (Pseudomonas stutzeri RCH2)
MPALPRQLSTLRTVLALLAILLDPFGLTTATDGASSRLLNQLQANAYGDAGARQQIAVVI
IDDAFLRQRESHWPLPYNEQSKLFRQLLAYRPAAVMVDLMYSYDHSRGRNGDSSRFLSNV
FERYRAAGVPLYLANSGSTESNALPIFTEVSEPALVSWSGYEDQYPLAAETAYGWMDSAA
FALYRSYCTRHACQPLPATAQLAGEQPPIALQWGGDPAREQRLVSDVNQCASSSGLWSRI
FSQLAQSVFWRLSAPTETRCPFHLTITASALATTVPEERAVLRELLGDRLVMVGASISSA
EDLTSSPVHGKLPGVYAHAMALDNLIEYGQDYIAAPPQLFNTEIDVLDLLEFIFALVILW
FHSARSGLLPGHRLAFAIGATLCLLLISVLLYQLRVTPVNILGLLLLIGVLLPEEPESPS
LPSTSTRKESSCANPSHCSAPCCSAVPATQPD