Protein Info for PGA1_c12860 in Phaeobacter inhibens DSM 17395

Annotation: putative taurine import ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 PF00005: ABC_tran" amino acids 45 to 186 (142 residues), 105.5 bits, see alignment E=1.8e-34

Best Hits

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 90% identity to sil:SPO1785)

Predicted SEED Role

"Pyrimidine ABC transporter, ATP-binding protein" in subsystem Pyrimidine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EL83 at UniProt or InterPro

Protein Sequence (279 amino acids)

>PGA1_c12860 putative taurine import ATP-binding protein (Phaeobacter inhibens DSM 17395)
MNMETTTQALNSQAAASDITPQVPVIEARNLDLTFQTNDGPVHALKDVSLEINKGDFVSF
IGPSGCGKTTFLRCIAALEQPTGGALMVNGMTPDEARRQRAYGYVFQAAGLYPWRSIAKN
IKLPLEIMGYSKAEQAARVEQVLELVELAGFGGKYPWQLSGGMQQRASIARALAFDADIL
LMDEPFGALDEIVRDHLNEQLLKLWARTDKTIGFVTHSIPEAVYLSTKIVVMSPRPGRIH
DVIDSPLPKERPLDIRDSAEFIEIAHRVRDGLRAGHADD