Protein Info for HP15_1237 in Marinobacter adhaerens HP15

Annotation: regulatory protein RecX-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 PF02631: RecX" amino acids 36 to 152 (117 residues), 85.6 bits, see alignment E=1.9e-28

Best Hits

Swiss-Prot: 47% identical to RECX_HALHL: Regulatory protein RecX (recX) from Halorhodospira halophila (strain DSM 244 / SL1)

KEGG orthology group: K03565, regulatory protein (inferred from 66% identity to maq:Maqu_2486)

Predicted SEED Role

"Regulatory protein RecX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PHN6 at UniProt or InterPro

Protein Sequence (156 amino acids)

>HP15_1237 regulatory protein RecX-like protein (Marinobacter adhaerens HP15)
MAKQENDNDQDYKARATALRLLARREHSRLELSLKLRQRKLPGDIINAVLDDYEKESWLD
DDRFADVYARQRMDLGYGPLRILGELQQRGVHKTPESVDEMTEEDWCQRAIGIRDKRFGL
ADLSEDWDEKVRQARFLNRRGFSASQVERALEARSE