Protein Info for HP15_1200 in Marinobacter adhaerens HP15

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1091 transmembrane" amino acids 777 to 795 (19 residues), see Phobius details PF13087: AAA_12" amino acids 956 to 1058 (103 residues), 47.3 bits, see alignment E=3.8e-16

Best Hits

KEGG orthology group: None (inferred from 72% identity to shn:Shewana3_1254)

Predicted SEED Role

"DNA helicase related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PHJ9 at UniProt or InterPro

Protein Sequence (1091 amino acids)

>HP15_1200 conserved hypothetical protein (Marinobacter adhaerens HP15)
MGQENIVRYWHAVELLQPQSAPKVEKRTNSYGAFIHNTPIADVIPPWSEESIAAKQELPK
QRVWSHTLFAHVYDSRLVAEQLEKVFGADQGYKEPQHRESALFAAKFNMAGHLVEDSFVL
SSEAWFLGRVLKGKDWSTGFEDDQRAVGDQAKALLGGEVTGSALRELTIWILDYIGISNF
FGDIDKKVFRFRSRPIKPQKPEREDDPLNSFMLEDLSNIADSISKGEKSRPLEEYLCQYN
ERLRLHVDDKHSSLQLIKSLMPDSYPLSCWPSEQHRGLVHSQQLAVNTTLAKLNSDDGLL
GINGPPGTGKTTLLRDLIASIVTSRADVLARLGRASDGFVRDGREEANDGGKKQACFKLD
SKLYGFEIVVASSNNGAVENITLELPQRDKIDESWLPEAEYFSELGELVSGQPAWGLISG
ALGSKSRRTKFVERYFYGQRPFGSAEQVAPEVDDKAGPVTERDVARSLSSTRSLEEGRDS
LKDHADTPRDKEKEAEGLLEWLNANAKINKTRSPAERQALWKEAVQDFETAKEDVRKTYA
AASRIRELIQHLCQTREKIREKSKTLTDLESKLGDTLNDLADLDTKESRPASIKLKKYLD
ALGKHQARRPSFWVKLFSLWRAQRDWETTGKLLKSQHDLAKSEFNRIARQTMRLDVSRKS
LETQVGDLQRSLQRLKDQGQAQEQDAIDLANTYRANHLLAWLKEGSIGRGEPIELAEPWQ
IEGWRQSRARVFIQALKLHRVFFELEAYRIRSNLFLINGILTGSRYRGLSREAIRSAWTT
LFMVVPVLSSTFASFSRSFGSLGASEIGWLFVDEAGQAPPQAAVGALWRTQRALMVGDPL
QLKPIVTVSDAVLEHMRTRYQINAHWLPNRQSAQTLADGATPLGRMAGPADDKTWVGMPL
VVHRRCDKPMHELANRVAYDGAMVFGTIPPKPDKETPASLPTGWIQAIGTSEGNWVPAEG
QALQRLLKLLEGDGVEAKDISVITPFKAVRENLNRILPDKVVSGTIHTMQGKEAAIIIMV
LGGNTENSGARNWVVSEPNLLNVAATRAKRRFYVIGDRGDWQNRALFCDVMDLLPLHSIS
ANEQKRIPPTP