Protein Info for Psest_1238 in Pseudomonas stutzeri RCH2

Annotation: Predicted membrane protein/domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 transmembrane" amino acids 21 to 44 (24 residues), see Phobius details amino acids 69 to 88 (20 residues), see Phobius details amino acids 116 to 137 (22 residues), see Phobius details PF06271: RDD" amino acids 15 to 151 (137 residues), 105.2 bits, see alignment E=1.7e-34

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_3055)

Predicted SEED Role

"FIG023103: Predicted transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GJ32 at UniProt or InterPro

Protein Sequence (165 amino acids)

>Psest_1238 Predicted membrane protein/domain (Pseudomonas stutzeri RCH2)
MRRHLLSPQGQFPAAGLLRRLAAMFYDSLLCIALMMVVTLLYQQVLLRLIYGSEQLQTLA
DAGRLDIDPLLSTLLLFSLFGFFAKFWTHNGQTLGMQVWGIRIQNADGRAIDLWQALLRF
LIALVSLLCLGMGYWWMLIDKQKRTWHDIYSDSQAVQLPKNIHKK