Protein Info for Psest_1216 in Pseudomonas stutzeri RCH2

Annotation: ATPase, P-type (transporting), HAD superfamily, subfamily IC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 904 transmembrane" amino acids 63 to 82 (20 residues), see Phobius details amino acids 88 to 104 (17 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details amino acids 278 to 304 (27 residues), see Phobius details amino acids 702 to 725 (24 residues), see Phobius details amino acids 731 to 751 (21 residues), see Phobius details amino acids 771 to 791 (21 residues), see Phobius details amino acids 803 to 822 (20 residues), see Phobius details amino acids 842 to 859 (18 residues), see Phobius details amino acids 870 to 890 (21 residues), see Phobius details PF00690: Cation_ATPase_N" amino acids 11 to 77 (67 residues), 69.2 bits, see alignment 6.6e-23 TIGR01494: HAD ATPase, P-type, family IC" amino acids 89 to 353 (265 residues), 152.3 bits, see alignment E=7.6e-49 amino acids 607 to 729 (123 residues), 112 bits, see alignment E=1.3e-36 PF00122: E1-E2_ATPase" amino acids 118 to 310 (193 residues), 173.8 bits, see alignment E=9.2e-55 PF00702: Hydrolase" amino acids 328 to 653 (326 residues), 74.8 bits, see alignment E=4.3e-24 PF13246: Cation_ATPase" amino acids 395 to 480 (86 residues), 67.3 bits, see alignment E=3.6e-22 PF12710: HAD" amino acids 489 to 650 (162 residues), 31.1 bits, see alignment E=1.1e-10 PF08282: Hydrolase_3" amino acids 625 to 685 (61 residues), 21.9 bits, see alignment 4.6e-08 PF00689: Cation_ATPase_C" amino acids 724 to 895 (172 residues), 146.8 bits, see alignment E=2.1e-46

Best Hits

KEGG orthology group: None (inferred from 91% identity to psa:PST_3076)

Predicted SEED Role

"Ca ion P-type ATPase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GK52 at UniProt or InterPro

Protein Sequence (904 amino acids)

>Psest_1216 ATPase, P-type (transporting), HAD superfamily, subfamily IC (Pseudomonas stutzeri RCH2)
MPEQQTRSNRWHACQTDEALRALDSSSAGLTHEQAQQRLLQYGANRLDEAKPASIWQRLL
RHVNNVLLYVLIAAALVTALMGHWVDTFVILVVVVLNVVIGFVQEGKAEKALQAIRHLLA
PHAVVLRDGRQQDIDAADLVPGDVVLLASGDSLPADVRLLQARNLRVDEAALTGESVPVD
KQVDAVAADASIGDRLCMGYAGTLVTQGQARAVVVATGAATEIGRIGRMLESVEQGTTPL
LRKMEEFGRILTMVILATGALLFLFGTLVRGMGAGEMFMAAVGLSVAAIPEGLPAIMTIT
LAIGVQRMATRNAVIRRLPAVETLGSVTVICSDKTGTLTRNEMTVQQVICAGQSVEVEGA
GYAPQGALLFEGSTVEPALLQKRSPAARALVEAAALCNDASLHEKDQAWMLAGDPTEGAL
LTLAMKAGLSPTVLQVDRPRLDVIPFESEHRFMATLHDCEGAREVLLKGAPERVLAMCSY
QLEADGDERPLNEAHWHEQIEAQARAGRRVLALARRRLAADKEDLDHADVASGLTLLGLV
GIIDPPRDEAITAVAQCRAAGIRVVMITGDHGVTASAIARQLGMGDDIKAITGPELELMD
EAAMRQAVAEARVFARASPEHKLRLVRALQANGEVVAMTGDGVNDAPALKQADVGVAMGM
KGTEAAKQAGAIVLADDNFASIAHAVEEGRTVYDNLRKTVTFLLPINGGESLSLLLAVLL
GIALPITPVQVLWVNMVSSVALALVLAFEPTEADVMQRPPRRPDEPMLSRFVIWRIFFVS
ALFLAGIFGMYQWMLSQGATVEAARTVAVNTLVCMEVFYLFSVRYLKAPSFTVQGVKGTP
RVLVAVFGVFALQLLFTYAPFMQSLFASEALSLTTGVLVVLAGVAVLLILEIEKALLRRV
GAGP