Protein Info for Psest_0116 in Pseudomonas stutzeri RCH2

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 PF05114: MbnB_TglH_ChrH" amino acids 5 to 268 (264 residues), 324.1 bits, see alignment E=2.9e-101

Best Hits

Swiss-Prot: 69% identical to Y992_PSEPK: UPF0276 protein PP_0992 (PP_0992) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K09930, hypothetical protein (inferred from 72% identity to ppg:PputGB1_3066)

Predicted SEED Role

"Uncharacterized protein conserved in bacteria, NMA0228-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GHD5 at UniProt or InterPro

Protein Sequence (275 amino acids)

>Psest_0116 Uncharacterized protein conserved in bacteria (Pseudomonas stutzeri RCH2)
MQILGAGLGLKPEHYADACASVAEGLWFEVHPENYMVGGGPRLDWLEAVGARHPLSLHGV
SLSLAADCAPDETHLQRLKALAERVRPALISEHLAWSSWRGNYHPDLLPFPRTTAALRRI
AANIEWTQEVLGQRIAIENPSHYLRFEQHEWDEIDFLAELSQRTGCGLLLDVNNVQVSAH
NLGFDAAAYLRRFPAAPIMEIHLAGHSRDDASSLLIDSHDAPVDAAVWALYRQLIERIGP
RPTLIERDDQLPAFDTLMVERDRAQQTLDEVAGWQ