Protein Info for PGA1_c11410 in Phaeobacter inhibens DSM 17395

Annotation: putative integral membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 34 to 52 (19 residues), see Phobius details amino acids 73 to 90 (18 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 147 to 164 (18 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 240 to 257 (18 residues), see Phobius details amino acids 263 to 280 (18 residues), see Phobius details PF00892: EamA" amino acids 5 to 137 (133 residues), 55.1 bits, see alignment E=4.8e-19 amino acids 146 to 274 (129 residues), 31.4 bits, see alignment E=1e-11

Best Hits

KEGG orthology group: None (inferred from 65% identity to sit:TM1040_0929)

Predicted SEED Role

"Arginine/ornithine antiporter ArcD" in subsystem Arginine Deiminase Pathway or Arginine and Ornithine Degradation or Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EY86 at UniProt or InterPro

Protein Sequence (298 amino acids)

>PGA1_c11410 putative integral membrane protein (Phaeobacter inhibens DSM 17395)
MNNVTGILLVILAMAGFSLEDMFIKQLAKSVPVGQILMMLGLGSGTVFVIWAKLQGHRVL
APRNWRWQPVLRASLEALAAVSFASALAVVDISTVAAVFQAMPLAVTVGAALFLGEDVGW
RRWSAILVGFAGVLMIVRPGLAGFEPGVLLVLISVVAVAARDLMTRVMDSAVPSAVVSSQ
AFGSVIPAGLVMLLVLPGEPVALQGGQWGMLLGGVIFGVLGYYGIVTATRIGNAAVITPF
RYSRLVFSTLIGVVVFAEAPDGMTLIGSALIIGSGLYTFLRERRLARHAARAAAVATA