Protein Info for HP15_1102 in Marinobacter adhaerens HP15

Annotation: integrase catalytic region

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF13276: HTH_21" amino acids 29 to 81 (53 residues), 53.7 bits, see alignment E=4e-18 PF00665: rve" amino acids 110 to 206 (97 residues), 96.1 bits, see alignment E=2.8e-31 PF13683: rve_3" amino acids 196 to 261 (66 residues), 41.4 bits, see alignment E=1.9e-14 PF13333: rve_2" amino acids 213 to 266 (54 residues), 49.3 bits, see alignment E=8.9e-17

Best Hits

KEGG orthology group: K07497, putative transposase (inferred from 75% identity to ddd:Dda3937_00051)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E4PGC4 at UniProt or InterPro

Protein Sequence (269 amino acids)

>HP15_1102 integrase catalytic region (Marinobacter adhaerens HP15)
MTMCRVLRVARSGLYQWLHKPLSDRAIDNQRLLAQILASYQGSSGVYGAPRVFLDLREAG
ETCGKNRVARLMKEHKIKALRGYKAPRVIAGRPSILNPNKLQCEFTVGCPDKAWVTDITY
IRTWQGWLYLAVVVDLFSRRVVGWSMKPTLHRSLVVDALLMAVWRRRPKEKVLIHSDQGT
QYGSDDWHRFCLAHNLDPSMSRRGNCWDNAVVESFFSSLKKERIRKRIYKTRDLAKADVF
DYIEVFYNRVRRHTHLGGVSPEAFEMASV