Protein Info for Psest_1154 in Pseudomonas stutzeri RCH2

Annotation: RND family efflux transporter, MFP subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 43 to 361 (319 residues), 265.3 bits, see alignment E=3.3e-83 PF16576: HlyD_D23" amino acids 70 to 268 (199 residues), 115.4 bits, see alignment E=4.8e-37 PF13437: HlyD_3" amino acids 165 to 265 (101 residues), 68.2 bits, see alignment E=1.9e-22

Best Hits

KEGG orthology group: None (inferred from 94% identity to psa:PST_3142)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0GG45 at UniProt or InterPro

Protein Sequence (377 amino acids)

>Psest_1154 RND family efflux transporter, MFP subunit (Pseudomonas stutzeri RCH2)
MLRRMLFMLGAVVVVVAILAALKFNSIYQQIQQFQAPKPAIDVETELARRMDWQSRLPAI
GTLRASQGIDLSVEIAGTITDVQFQSGEKVSKGQPIVLLDSEMERASLASAEADLNLSRV
EFQRARSLLDRQAISRSEYDRLNAESQKAEASVAQLRASLAKKRILAPFAGTIGIRQVDV
GDYIAAGTPIATLQDLSTLYVDFFLAEQHVPLLALGQKVQLRVAAYPDQRFEGVITALNP
KVETTTRNVQVRAELANPDGRLLPGMFADLQVLLPTETAQVVVPETAITYTLYGNSVLLV
TEGTPPEGVTTDEPYLVVERRFVTTGERRDGVTVILEGLEGGEQVITAGQLKLDSGAHVA
IAENRTLKLDGTEPASE