Protein Info for PGA1_c11255 in Phaeobacter inhibens DSM 17395

Annotation: 50S ribosomal protein L32

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 68 TIGR01031: ribosomal protein bL32" amino acids 2 to 55 (54 residues), 86.2 bits, see alignment E=7e-29 PF01783: Ribosomal_L32p" amino acids 2 to 56 (55 residues), 90.2 bits, see alignment E=3.8e-30

Best Hits

Swiss-Prot: 93% identical to RL32_RUEST: 50S ribosomal protein L32 (rpmF) from Ruegeria sp. (strain TM1040)

KEGG orthology group: K02911, large subunit ribosomal protein L32 (inferred from 93% identity to sit:TM1040_0916)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7DZH4 at UniProt or InterPro

Protein Sequence (68 amino acids)

>PGA1_c11255 50S ribosomal protein L32 (Phaeobacter inhibens DSM 17395)
MAVQQNKVSKSRRNNRRAHDALVAANPNECGNCGELKRPHHVCPSCGHYDEKEIVAAADE
IDMDEDAA