Protein Info for PGA1_c11220 in Phaeobacter inhibens DSM 17395

Annotation: Predicted transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1154 PF00376: MerR" amino acids 10 to 47 (38 residues), 33.2 bits, see alignment (E = 3.6e-12) PF13411: MerR_1" amino acids 10 to 78 (69 residues), 69.1 bits, see alignment 2.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EY71 at UniProt or InterPro

Protein Sequence (1154 amino acids)

>PGA1_c11220 Predicted transcriptional regulators (Phaeobacter inhibens DSM 17395)
MSKSPDAFRTISEVAEWLGIQAHVLRFWESKFTQIKPVKRAGGRRYYRPADVELLGSIKT
LLHDKGLSIKDVQALLREHGPAHVAAMGAGNPPAAEPEVTDPAPSDGEMVIEAEVSPSEE
IIAAEALVEADIPADAAPQEAPAATEPPLAAPAESAPALETPAPAEPSQAAPTPIDQTQA
EPVNVAPSENAGAPAASAVAAAPAAAAPAAPTAAAPTVSGASNVPSTAPAAPASTPPTST
APAPTGLAPSASPQAEVPVVPQDRISTPAATPTPSAPAPTISGNPQADIPQGEIPQEPST
AAPQPGFDAPMAADPIGTAVSQTGSLHPPASATSETAIPATSVPAGGIIGETPEGGSTDV
PPGDATAASATPPAAPMAAPVTAPPVTAPPVTSATPPAPMGAAMADTAAPEPKTPPEGPA
MGAQPGLPLENADQAPDAKATASEGDVTAPAEISQDVDIETNLETPAAEQGQLWDAAPDV
PEGISETAPESSETAALPDEAEILIPAEDIDVTPDTVELMTPATETVASVAPSEVDSIEV
EAVEVGAEPISEPNLDSVAAVETSAETVASVEEIDVESASPWSDEDGADGPATDEPVITV
GAAAPQTPDLIADPETASAPTAALHDATETVAVAMPQVSEPETSAPDAPRFDTIGPGAAS
TGSTQDPVVFDQGGSPAPVVETLDSDPALADMTMPEQGAAPMGEPLPEPLSDLGDDPLGT
AEAAPAAEDLLSVAPEAADAHPDDQLDNDLADKNEAPSPEDNPLAFADVAATPEPLSDAP
MQAAETPEPHADEPDLIEAAALPEMANVSAVTADALDLDAPALDEKMVSDPVMSAPAVSD
DLLDTPVTEETPLPEPEPVEPEQSVPEQSVPEQSVPEQSVPEQSVPEQSVPEPLVPDLDD
AADAALPEPSAEPVGEEATDVTAETLELSAPAELGEPMELAEPAELGAPAELTETVPTPA
PLPQAGSPEVAEEVAAEEMVAAPQSDLPEVDLPEADLPEAGLQETDPPEVAPAAAFEMPE
TAQDIPEQDLSELADVDLTEPAPLEADAHDQESVDVDGGNPDLDTPDLIDPELVTADPAE
AEPPAESPVAEEVGESAPAGPKPLVIEIPDEAEPQAPQASGVLARLAGVDHLPADHMAEA
RACVERLRAHQEAA