Protein Info for PGA1_c11180 in Phaeobacter inhibens DSM 17395

Annotation: segregation and condensation protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 TIGR00281: segregation and condensation protein B" amino acids 27 to 186 (160 residues), 108 bits, see alignment E=2.1e-35 PF04079: SMC_ScpB" amino acids 28 to 181 (154 residues), 163 bits, see alignment E=2.2e-52

Best Hits

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 80% identity to sit:TM1040_0907)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See I7EVQ0 at UniProt or InterPro

Protein Sequence (220 amino acids)

>PGA1_c11180 segregation and condensation protein B (Phaeobacter inhibens DSM 17395)
MDDHSQNTVAEETQTLFEAPPMAEQERMVEAVLFASAEPVTVRDLEARMPHGCEPGTAME
HLRKRYEGRGVNIVRVGDAWALRTASDLGFLMQKETVETRKLSRAAIETLAIIAYHQPVT
RAEIEEVRGVSVSRGTIDQLLEMDWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESARDLP
GLKELRAAGLLENRPPPGSLPMGGRGDSDEVEEQPELFGD